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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
47
ATAC-seq
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
94
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
36
February, 2023
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
June, 2019
2
March, 2020
Available data
181
bam
tsv
154
bigWig
121
bed narrowPeak
64
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
155
Homo sapiens
Biosample type
135
tissue
14
cell line
6
primary cell
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
157
vasculature
155
heart
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
155
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
155
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
4
1
1
coronary artery
5
36
heart
14
1
1
1
heart right ventricle
13
2
1
right atrium auricular region
10
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
1
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