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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
75
ATAC-seq
59
single cell RNA-seq
52
ChIP-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
108
Transcription
82
DNA accessibility
52
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
130
August, 2021
47
September, 2023
23
April, 2019
21
October, 2019
14
May, 2023
5
July, 2019
5
May, 2019
3
June, 2019
1
December, 2019
Available data
104
bed narrowPeak
65
bam
64
xls
62
txt
52
bigWig
25
bigBed narrowPeak
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
249
Homo sapiens
Biosample type
219
tissue
18
primary cell
12
cell line
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
157
vasculature
155
heart
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
202
AMP
47
KPMP
Genome assembly (visualization)
114
GRCh38
45
hg19
Lab
142
Katalin Susztak, Upenn
58
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
249 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
RRBS
STARR-seq
FAIRE-seq
Hi-C
tissue
kidney
75
59
27
49
6
1
1
1
primary cell
epithelial cell of proximal tubule
10
1
kidney epithelial cell
5
1
renal cortical epithelial cell
1
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
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