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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
9
DNA binding
5
DNA accessibility
Target of assay
9
control
Date released
5
December, 2017
4
February, 2023
2
August, 2017
2
August, 2021
2
February, 2021
2
September, 2017
1
May, 2022
Available data
3183
bam
bigWig
1608
bed narrowPeak
1600
tsv
1346
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
11
in vitro differentiated cells
4
tissue
1
cell line
1
primary cell
1
stem cell
Organ
8
connective tissue
2
liver
2
pancreas
1
embryo
1
musculature of body
Project
18
AMP
Genome assembly (visualization)
18
hg19
9
GRCh38
Lab
16
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
islet of Langerhans
2
liver
1
skeletal muscle tissue
1
cell line
HepG2
1
primary cell
osteoblast
1
stem cell
hESC
1
See all biosamples
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