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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
5
Hi-C
4
ATAC-seq
3
ChIP-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
3D chromatin structure
5
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
5
August, 2021
4
February, 2023
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
October, 2019
Available data
3183
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
19
Homo sapiens
Biosample type
10
primary cell
6
in vitro differentiated cells
2
cell line
1
tissue
Organ
8
connective tissue
5
epithelium
5
liver
3
brain
2
blood vessel
2
vasculature
1
musculature of body
1
pancreas
Project
19
AMP
Genome assembly (visualization)
19
hg19
4
GRCh38
Lab
15
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
19 results
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Clear Filters
Hi-C
ATAC-seq
ChIP-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
Panc1
1
tissue
skeletal muscle tissue
1
See all biosamples
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