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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
whole genome sequencing assay
Assay category
5
3D chromatin structure
1
DNA sequencing
Date released
4
July, 2019
1
August, 2021
1
October, 2019
Available data
3183
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1346
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
cell line
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
6
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
6 results
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Clear Filters
Hi-C
whole genome sequencing assay
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
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