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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
Assay category
76
DNA accessibility
Date released
64
August, 2021
10
February, 2023
2
February, 2021
Available data
3183
bam
2920
bigWig
1600
tsv
1568
bed narrowPeak
1346
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
76
Homo sapiens
Biosample type
69
tissue
5
in vitro differentiated cells
1
cell line
1
primary cell
Organ
64
kidney
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
76
AMP
Genome assembly (visualization)
66
GRCh38
12
hg19
Lab
64
Katalin Susztak, Upenn
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
tissue
kidney
64
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
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in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
primary cell
osteoblast
1
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