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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
24
ChIP-seq
6
MeRIP-seq
4
ATAC-seq
2
Capture-C
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
30
Transcription
24
DNA binding
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
control
9
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
December, 2017
3
June, 2019
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
56
bam
50
bigWig
31
tsv
20
bed narrowPeak
5
fastq
4
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
68
Homo sapiens
Biosample type
55
cell line
9
primary cell
4
in vitro differentiated cells
Organ
84
bone element
68
epithelium
60
pancreas
22
kidney
18
connective tissue
8
musculature of body
5
heart
4
embryo
3
brain
1
adipose tissue
1
liver
1
stomach
1
urinary bladder
Project
65
AMP
3
T1D
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
62
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
68
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
month_released!
May, 2021
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
Capture-C
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
29
14
6
3
2
1
primary cell
epithelial cell of proximal tubule
3
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
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