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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
291
Transcription
136
DNA accessibility
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
99
February, 2023
93
May, 2022
59
September, 2020
47
September, 2023
45
May, 2020
39
February, 2021
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
163
fastq
112
zippedFastqFolder
60
bigWig
50
bam
47
tsv
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
434
Homo sapiens
Biosample type
331
primary cell
96
tissue
10
cell line
2
stem cell
Organ
138
pancreas
108
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
277
HPAP
91
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
61
GRCh38
53
hg19
Lab
277
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
assay_title!
DNase-seq
WGBS
month_released!
May, 2021
award.project!
AMP
BIOSAMPLE
ASSAY
439 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
peripheral blood mononuclear cell
8
+ See 27 more…
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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