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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
687
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1085
Transcription
687
DNA binding
261
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
238
October, 2019
229
August, 2021
193
May, 2020
118
July, 2018
115
May, 2019
108
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1692
bam
1557
bigWig
1038
tsv
807
bed narrowPeak
384
bigBed narrowPeak
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2190
Homo sapiens
Biosample type
2192
tissue
443
primary cell
212
cell line
121
in vitro differentiated cells
6
stem cell
Organ
503
connective tissue
444
adipose tissue
284
heart
277
liver
251
pancreas
231
kidney
228
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
2096
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1374
GRCh38
1272
hg19
Lab
1868
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
26
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
assay_title!
DNase-seq
month_released!
May, 2021
files.file_type!
fastq
BIOSAMPLE
ASSAY
2192 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
liver
167
78
20
1
1
2
1
1
islet of Langerhans
159
43
48
7
4
3
1
4
kidney
49
27
75
64
6
1
1
1
bone element
84
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