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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
11
ChIP-seq
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
44
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
74
bam
62
bigWig
58
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
66
cell line
45
tissue
2
primary cell
Organ
921
pancreas
778
liver
671
connective tissue
488
adipose tissue
475
epithelium
355
heart
kidney
182
vasculature
178
blood vessel
168
brain
159
bone element
113
artery
69
blood
69
bodily fluid
63
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
113
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
113
AMP-T2D consortium
assay_title!
DNase-seq
month_released!
October, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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