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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
89
total RNA-seq
5
ATAC-seq
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
171
DNA binding
89
Transcription
6
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
268
August, 2017
260
May, 2020
199
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
72
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
23
June, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
September, 2017
4
November, 2020
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
284
fastq
278
bam
268
bigWig
138
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
262
Homo sapiens
Biosample type
177
tissue
47
in vitro differentiated cells
44
primary cell
Organ
158
pancreas
64
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
268
AMP
Genome assembly (visualization)
266
hg19
245
GRCh38
Lab
268
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
268 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
47
primary cell
skeletal muscle myoblast
15
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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