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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
DNase-seq
1
FAIRE-seq
Assay category
181
DNA binding
89
Transcription
8
DNA methylation
6
DNA accessibility
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
284
August, 2017
94
December, 2017
79
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
284
fastq
278
bam
268
bigWig
138
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
277
Homo sapiens
Biosample type
174
tissue
57
primary cell
53
in vitro differentiated cells
Organ
167
pancreas
71
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
284
AMP
Genome assembly (visualization)
252
hg19
247
GRCh38
Lab
284
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
284 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
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