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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
89
total RNA-seq
5
ATAC-seq
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
173
DNA binding
89
Transcription
6
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
272
August, 2017
260
May, 2020
209
October, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
65
April, 2019
62
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
23
June, 2019
13
October, 2017
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
266
bigWig
252
fastq
248
bam
138
bed narrowPeak
89
tsv
39
bed broadPeak
38
bigBed narrowPeak
38
tagAlign
33
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
266
Homo sapiens
Biosample type
179
tissue
48
in vitro differentiated cells
45
primary cell
Organ
158
pancreas
63
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
272
AMP
Genome assembly (visualization)
272
hg19
247
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
month_released!
January, 2018
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
48
primary cell
skeletal muscle myoblast
15
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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