Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
89
total RNA-seq
6
RRBS
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
246
DNA binding
89
Transcription
9
DNA methylation
5
DNA accessibility
Target of assay
167
histone modification
166
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
399
May, 2021
349
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
303
October, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
15
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
266
fastq
261
bam
251
bigWig
135
bed narrowPeak
89
tsv
77
tagAlign
38
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
342
Homo sapiens
Biosample type
225
tissue
67
in vitro differentiated cells
57
primary cell
Organ
187
pancreas
124
connective tissue
adipose tissue
53
liver
29
epithelium
26
musculature of body
Project
349
AMP
Genome assembly (visualization)
257
hg19
231
GRCh38
Lab
349
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
349 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
Download