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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
10
total RNA-seq
8
ATAC-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
40
DNA binding
13
Transcription
8
DNA accessibility
Target of assay
19
histone
19
histone modification
14
broad histone mark
14
transcription factor
7
control
6
RNA binding protein
6
chromatin remodeller
5
narrow histone mark
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
50
bam
47
fastq
45
bigWig
33
bed narrowPeak
27
bigBed narrowPeak
14
tagAlign
14
tsv
4
bed broadPeak
Organism
63
Homo sapiens
Biosample type
33
tissue
23
cell line
5
primary cell
2
in vitro differentiated cells
Organ
18
blood
18
bodily fluid
16
brain
10
liver
8
spleen
6
epithelium
5
pancreas
3
kidney
1
adipose tissue
1
connective tissue
Project
63
AMP
Genome assembly (visualization)
45
GRCh38
44
hg19
Lab
62
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
tissue
brain
15
spleen
7
1
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 4 more…
cell line
GM12878
18
HepG2
5
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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