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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
113
bam
108
bigWig
65
tsv
30
bed narrowPeak
25
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
139
Homo sapiens
Biosample type
77
tissue
62
primary cell
Organ
30
connective tissue
30
heart
20
musculature of body
19
epithelium
18
brain
14
kidney
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
6
pancreas
5
limb
4
eye
3
artery
2
pericardium
Project
139
AMP
Genome assembly (visualization)
114
hg19
102
GRCh38
Lab
139
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
139 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
skeletal muscle satellite cell
1
8
1
mesenchymal stem cell
7
cardiac fibroblast
5
1
epithelial cell of proximal tubule
1
3
1
cardiac muscle cell
3
1
+ See 21 more…
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