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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
24
total RNA-seq
12
ChIP-seq
10
MeRIP-seq
2
Hi-C
DNase-seq
Assay category
27
DNA accessibility
24
Transcription
12
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
1
RNA binding protein
transcription factor
Date released
710
February, 2021
383
May, 2021
359
August, 2017
341
May, 2020
308
August, 2021
297
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
27
June, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
63
bam
37
bed narrowPeak
34
bigWig
24
tsv
2
bedpe bed3+
2
hic
Organism
75
Homo sapiens
Biosample type
44
tissue
21
cell line
5
in vitro differentiated cells
5
primary cell
Organ
64
pancreas
21
epithelium
6
connective tissue
1
adipose tissue
Project
75
AMP
Genome assembly (visualization)
63
hg19
61
GRCh38
Lab
65
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
assay_title!
DNase-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
MeRIP-seq
Hi-C
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
6
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
osteoblast
1
4
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