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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
108
ATAC-seq
56
ChIP-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
246
Transcription
108
DNA accessibility
56
DNA binding
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
294
bam
268
bigWig
189
tsv
52
fastq
50
tagAlign
32
bed narrowPeak
19
zippedFastqFolder
5
bigBed narrowPeak
2
bed bed3+
Organism
411
Homo sapiens
Biosample type
211
primary cell
199
tissue
1
cell line
Organ
194
liver
30
pancreas
24
epithelium
Project
307
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
267
hg19
217
GRCh38
Lab
307
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
411 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
4
macrophage
11
+ See 28 more…
tissue
liver
143
50
islet of Langerhans
6
cell line
HepG2
1
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