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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
642
ChIP-seq
185
ATAC-seq
DNase-seq
110
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1112
Transcription
642
DNA binding
210
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
422
histone modification
421
histone
217
broad histone mark
204
narrow histone mark
129
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
223
August, 2017
185
October, 2019
143
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
74
October, 2018
73
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
17
November, 2018
16
November, 2017
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1700
bam
1572
bigWig
1064
tsv
722
bed narrowPeak
367
fastq
365
bigBed narrowPeak
tagAlign
95
txt
37
bed broadPeak
29
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2128
Homo sapiens
Biosample type
2130
tissue
933
primary cell
622
cell line
353
in vitro differentiated cells
10
stem cell
Organ
537
connective tissue
482
pancreas
478
adipose tissue
287
liver
286
heart
kidney
158
bone element
128
blood vessel
128
vasculature
120
brain
86
limb
69
artery
53
eye
41
nerve
35
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2080
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1469
GRCh38
1464
hg19
Lab
1967
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
DNase-seq
organ_slims!
kidney
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
2130 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
298
62
68
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
75
20
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
4
1
1
1
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