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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
100
total RNA-seq
3
ATAC-seq
DNase-seq
1
Hi-C
1
WGBS
Assay category
404
DNA binding
100
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
349
transcription factor
81
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
12
November, 2019
7
March, 2020
7
October, 2019
5
May, 2021
1
January, 2018
Available data
566
bam
509
bigWig
427
fastq
395
bed narrowPeak
353
bigBed narrowPeak
113
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
509
Homo sapiens
Biosample type
1572
tissue
566
primary cell
509
cell line
258
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
55
pancreas
49
epithelium
kidney
8
embryo
Project
505
AMP
4
T1D
Genome assembly (visualization)
504
hg19
441
GRCh38
Lab
495
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
48
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
DNase-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
509 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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