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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1819
ChIP-seq
1380
total RNA-seq
353
ATAC-seq
298
single cell RNA-seq
DNase-seq
85
RNA microarray
76
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
STARR-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
75
Homo sapiens
Biosample type
56
primary cell
20
tissue
Organ
10
lung
9
pancreas
8
blood
8
bodily fluid
kidney
1
musculature of body
Project
48
HPAP
16
T1D
10
LungMap
2
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
29
audit script error
assay_title!
DNase-seq
organ_slims!
kidney
month_released!
February, 2023
BIOSAMPLE
ASSAY
76 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
5
pancreas
4
skeletal muscle tissue
1
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