Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
DNase-seq
15
total RNA-seq
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
67
DNA binding
16
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
47
April, 2019
14
July, 2019
12
May, 2019
8
October, 2019
4
March, 2020
3
June, 2019
3
May, 2021
Available data
86
bigWig
85
bam
70
bed narrowPeak
61
bigBed narrowPeak
16
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
91
Homo sapiens
Biosample type
84
tissue
6
primary cell
1
in vitro differentiated cells
Organ
652
pancreas
620
liver
581
connective tissue
424
adipose tissue
300
epithelium
161
heart
vasculature
151
blood vessel
142
brain
89
artery
70
bone element
60
limb
57
kidney
55
blood
55
bodily fluid
40
musculature of body
30
eye
29
embryo
29
nerve
15
vein
13
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
131
GRCh38
91
hg19
Lab
91
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
DNase-seq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
91 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
3
2
1
1
heart
12
4
1
1
heart right ventricle
11
1
1
right atrium auricular region
7
2
1
right cardiac atrium
5
+ See 2 more…
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download