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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
68
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
68
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
57
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
435
bam
418
bigWig
401
tsv
38
fastq
8
tagAlign
6
bed narrowPeak
4
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
483
Homo sapiens
Biosample type
481
tissue
2
primary cell
1
in vitro differentiated cells
Organ
929
pancreas
727
liver
665
connective tissue
497
epithelium
484
adipose tissue
317
heart
270
kidney
251
brain
220
vasculature
217
blood vessel
159
bone element
136
artery
86
limb
63
musculature of body
59
blood
59
bodily fluid
56
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
484
AMP
Genome assembly (visualization)
419
hg19
417
GRCh38
Lab
484
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
484 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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