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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
235
DNA binding
24
Transcription
6
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
105
October, 2019
91
November, 2017
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
1
February, 2023
Available data
229
bam
203
bigWig
182
bed narrowPeak
118
tagAlign
106
bigBed narrowPeak
26
tsv
19
fastq
17
bed broadPeak
8
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
274
Homo sapiens
Biosample type
238
tissue
36
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
274
AMP
Genome assembly (visualization)
195
GRCh38
157
hg19
Lab
274
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
endothelial cell of umbilical vein
17
2
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
+ See 2 more…
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