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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
61
total RNA-seq
46
ATAC-seq
DNase-seq
2
single cell RNA-seq
Assay category
69
DNA binding
63
Transcription
46
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
64
October, 2019
35
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
Available data
138
bam
110
bigWig
95
bed narrowPeak
63
tsv
45
bigBed narrowPeak
6
tagAlign
Organism
178
Homo sapiens
Biosample type
110
tissue
66
cell line
2
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
178
AMP
Genome assembly (visualization)
153
GRCh38
118
hg19
Lab
178
AMP-T2D consortium
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
tissue
coronary artery
5
1
36
tibial nerve
35
5
1
tibial artery
23
1
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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