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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
54
ChIP-seq
46
ATAC-seq
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
54
DNA binding
46
DNA accessibility
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
1
October, 2017
Available data
121
bam
96
bigWig
83
bed narrowPeak
59
tsv
33
bigBed narrowPeak
23
fastq
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
161
Homo sapiens
Biosample type
93
tissue
66
cell line
2
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
139
GRCh38
102
hg19
Lab
161
AMP-T2D consortium
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
5
36
tibial artery
1
23
1
spleen
20
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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