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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
56
total RNA-seq
44
ATAC-seq
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
102
DNA binding
62
Transcription
45
DNA accessibility
3
3D chromatin structure
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
22
control
9
transcription factor
5
RNA binding protein
Date released
66
February, 2021
50
May, 2019
43
October, 2019
35
February, 2023
July, 2019
6
August, 2021
6
November, 2017
4
March, 2020
3
February, 2020
Available data
165
bam
134
bigWig
120
bed narrowPeak
72
bigBed narrowPeak
63
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
6
tagAlign
3
hic
2
bedpe bed3+
1
tar
Organism
213
Homo sapiens
Biosample type
121
tissue
66
cell line
26
primary cell
Organ
932
pancreas
775
liver
657
connective tissue
492
epithelium
477
adipose tissue
298
heart
262
kidney
236
brain
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
172
GRCh38
145
hg19
Lab
213
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
tibial artery
23
1
1
aorta
13
1
4
1
1
ascending aorta
16
1
thoracic aorta
16
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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