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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
335
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
712
February, 2021
390
May, 2021
356
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
265
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
73
December, 2017
73
November, 2018
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
23
June, 2019
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
10
December, 2019
10
November, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
321
bam
318
bigWig
313
bed narrowPeak
312
bigBed narrowPeak
265
fastq
70
bed broadPeak
67
tagAlign
64
bigBed broadPeak
3
tar
Organism
350
Homo sapiens
Biosample type
259
cell line
85
tissue
6
primary cell
Organ
259
liver
76
brain
14
kidney
4
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
350
AMP
Genome assembly (visualization)
292
GRCh38
266
hg19
Lab
336
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
350 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
259
tissue
layer of hippocampus
19
kidney
11
3
caudate nucleus
13
substantia nigra
13
cingulate gyrus
12
+ See 3 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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