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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
49
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
49
October, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
Available data
61
bam
56
bed narrowPeak
55
bigWig
48
bigBed narrowPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
70
Homo sapiens
Biosample type
70
tissue
Organ
885
pancreas
677
liver
640
connective tissue
475
epithelium
465
adipose tissue
343
heart
261
kidney
223
brain
203
vasculature
200
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
70
AMP-T2D consortium
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
24
1
5
tibial artery
18
1
1
muscle of leg
6
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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