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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
64
DNA binding
9
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
control
Date released
66
October, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
Available data
77
bam
68
bigWig
67
bed narrowPeak
59
bigBed narrowPeak
7
tsv
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
87
Homo sapiens
Biosample type
69
tissue
18
primary cell
Organ
885
pancreas
677
liver
640
connective tissue
475
epithelium
465
adipose tissue
343
heart
261
kidney
223
brain
203
vasculature
200
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
75
hg19
70
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
24
1
5
tibial artery
18
1
1
muscle of leg
6
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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primary cell
endothelial cell of umbilical vein
15
2
1
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