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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
Assay category
78
DNA binding
Target of assay
345
transcription factor
181
histone modification
180
histone
136
control
102
narrow histone mark
82
recombinant protein
78
broad histone mark
64
RNA binding protein
23
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
25
August, 2017
15
October, 2019
10
December, 2017
10
September, 2018
8
November, 2017
6
November, 2019
2
August, 2021
2
May, 2019
Available data
65
bam
64
bigWig
61
bed narrowPeak
41
fastq
28
bigBed narrowPeak
18
tagAlign
10
bed broadPeak
10
bigBed broadPeak
1
bed bed3+
Organism
78
Homo sapiens
Biosample type
31
primary cell
25
tissue
15
cell line
7
in vitro differentiated cells
Organ
78
pancreas
70
brain
57
heart
45
blood vessel
45
vasculature
44
connective tissue
44
epithelium
42
liver
34
limb
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
embryo
4
spleen
Project
78
AMP
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
77
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
pancreatic acinar cell
4
epithelial cell of proximal tubule
3
pancreatic alpha cell
3
+ See 3 more…
tissue
liver
22
right lobe of liver
3
cell line
HepG2
9
EndoC_BH1
6
in vitro differentiated cells
hepatocyte
7
See all biosamples
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