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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
Assay category
384
DNA binding
Target of assay
780
histone modification
779
histone
504
transcription factor
399
narrow histone mark
379
broad histone mark
308
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
93
August, 2017
56
May, 2019
52
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
3
November, 2018
Available data
314
bigWig
313
bed narrowPeak
283
bam
226
bigBed narrowPeak
96
tagAlign
90
fastq
29
bed broadPeak
11
bed bed3+
9
bigBed broadPeak
Organism
380
Homo sapiens
Biosample type
306
tissue
primary cell
56
in vitro differentiated cells
21
cell line
1
stem cell
Organ
70
brain
57
heart
51
pancreas
43
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
7
spleen
4
embryo
Project
384
AMP
Genome assembly (visualization)
301
GRCh38
258
hg19
Lab
353
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
384 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
11
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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