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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
1113
total RNA-seq
366
ATAC-seq
285
single cell RNA-seq
185
DNase-seq
86
RNA microarray
73
snATAC-seq
56
pCHi-C
24
WGBS
21
Hi-C
16
small RNA-seq
13
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
13
DNA methylation
Date released
7
July, 2019
6
August, 2017
Available data
11
bed bedMethyl
11
bigBed bedMethyl
4
fastq
Organism
13
Homo sapiens
Biosample type
9
tissue
4
primary cell
Organ
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
13
AMP
Genome assembly (visualization)
11
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
organ_slims!
pancreas
epithelium
BIOSAMPLE
ASSAY
13 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
liver
1
+ See 1 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
See all biosamples
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