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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
24
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA methylation
Target of assay
21
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
27
bam
10
tsv
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
bigBed broadPeak
2
hdf5
2
tagAlign
1
fastq
Organism
40
Homo sapiens
Biosample type
28
tissue
10
primary cell
2
cell line
Organ
309
pancreas
246
liver
227
epithelium
148
kidney
127
heart
118
connective tissue
93
bone element
68
brain
67
adipose tissue
55
eye
43
musculature of body
42
vasculature
40
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
GRCh38
146
hg19
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
assembly!
GRCh38
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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