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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
443
total RNA-seq
159
DNase-seq
116
ATAC-seq
14
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
FAIRE-seq
1
snATAC-seq
Assay category
510
DNA binding
463
Transcription
276
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
436
histone modification
435
histone
237
narrow histone mark
198
broad histone mark
71
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
170
May, 2020
164
August, 2017
162
October, 2019
146
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
48
July, 2019
40
October, 2018
39
May, 2022
39
November, 2019
38
May, 2021
36
December, 2017
32
February, 2023
18
March, 2020
15
November, 2018
12
October, 2017
8
February, 2021
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
September, 2017
1
August, 2021
1
January, 2018
Available data
1167
bam
1164
bigWig
760
bed narrowPeak
479
bigBed narrowPeak
464
tsv
271
fastq
193
bed broadPeak
183
bed bed3+
158
bigBed broadPeak
104
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1263
Homo sapiens
Biosample type
1269
tissue
593
primary cell
530
cell line
224
in vitro differentiated cells
3
stem cell
Organ
connective tissue
424
adipose tissue
411
pancreas
268
liver
142
brain
113
heart
96
limb
91
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1267
AMP
2
T1D
Genome assembly (visualization)
1379
GRCh38
1269
hg19
Lab
1226
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1269 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
31
260
1
42
2
1
6
liver
83
147
2
20
1
1
1
heart left ventricle
29
3
3
2
1
1
body of pancreas
26
2
2
4
2
kidney
20
13
1
1
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