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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
ChIP-seq
42
ATAC-seq
40
DNase-seq
26
total RNA-seq
9
single cell RNA-seq
7
Hi-C
4
small RNA-seq
3
pCHi-C
FAIRE-seq
2
RRBS
2
WGBS
Assay category
308
DNA binding
82
DNA accessibility
39
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
256
histone
256
histone modification
141
narrow histone mark
115
broad histone mark
49
control
6
RNA binding protein
6
transcription factor
Date released
132
October, 2019
91
November, 2017
78
May, 2019
36
February, 2023
34
June, 2019
27
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
6
March, 2020
2
November, 2018
Available data
351
bam
315
bed narrowPeak
309
bigWig
201
bigBed narrowPeak
118
tagAlign
57
bed broadPeak
48
bigBed broadPeak
44
bed bed3+
42
tsv
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
Organism
443
Homo sapiens
Biosample type
397
tissue
cell line
46
primary cell
Organ
852
pancreas
684
connective tissue
491
adipose tissue
444
epithelium
390
liver
334
kidney
327
heart
285
brain
169
vasculature
163
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
443
AMP
Genome assembly (visualization)
337
GRCh38
252
hg19
Lab
443
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
FAIRE-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
443 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
pCHi-C
RRBS
WGBS
tissue
coronary artery
5
36
2
1
brain
20
1
14
1
1
tibial artery
23
1
2
1
layer of hippocampus
23
aorta
13
1
4
1
1
2
+ See 83 more…
primary cell
endothelial cell of umbilical vein
17
2
2
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 7 more…
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