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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
62
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
62
DNA binding
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
41
histone
41
histone modification
23
broad histone mark
18
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
22
July, 2019
11
April, 2019
8
October, 2019
7
March, 2020
4
May, 2019
3
May, 2021
2
February, 2020
2
June, 2019
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
192
Homo sapiens
Biosample type
186
tissue
5
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
70
GRCh38
30
hg19
Lab
152
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
assay_title!
FAIRE-seq
files.file_type!
bigBed narrowPeak
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
192 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
7
3
4
2
1
1
1
heart right ventricle
17
2
1
2
1
1
right cardiac atrium
18
1
1
1
heart
1
7
4
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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