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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
28
ChIP-seq
Assay category
195
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
20
August, 2017
9
October, 2019
6
November, 2017
1
November, 2020
Available data
3387
bam
3164
bigWig
1812
bed narrowPeak
1600
tsv
fastq
1037
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
223
Homo sapiens
Biosample type
193
tissue
29
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
223
AMP
Genome assembly (visualization)
200
GRCh38
200
hg19
Lab
223
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
FAIRE-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
223 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 42 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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