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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
32
DNase-seq
FAIRE-seq
Assay category
170
DNA binding
32
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
Available data
242
bam
221
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
191
tissue
11
primary cell
Organ
441
liver
212
pancreas
202
brain
182
kidney
151
heart
150
epithelium
132
vasculature
128
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
12
vein
8
bone element
8
skeleton
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
201
GRCh38
140
hg19
Lab
202
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
DNase-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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