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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
17
ChIP-seq
12
ATAC-seq
2
DNase-seq
2
Hi-C
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
17
DNA binding
14
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
20
October, 2019
8
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
85
bam
72
bigWig
58
tsv
20
bed narrowPeak
12
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
Organism
180
Homo sapiens
Biosample type
158
tissue
22
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
353
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
1
T1D
Genome assembly (visualization)
86
hg19
78
GRCh38
Lab
179
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
180 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of umbilical vein
17
2
2
megakaryocyte
1
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