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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
161
DNA accessibility
121
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
174
bed narrowPeak
128
bam
118
bigWig
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
334
Homo sapiens
Biosample type
298
tissue
36
primary cell
cell line
Organ
852
pancreas
684
connective tissue
491
adipose tissue
444
epithelium
390
liver
334
kidney
287
heart
285
brain
169
vasculature
163
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
287
AMP
47
KPMP
Genome assembly (visualization)
193
GRCh38
116
hg19
Lab
145
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
assay_title!
FAIRE-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
334 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney epithelial cell
1
1
5
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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