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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
5
WGBS
2
RRBS
Assay category
552
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
52
August, 2017
50
May, 2020
50
November, 2018
22
August, 2021
5
October, 2019
2
July, 2019
Available data
511
bam
455
fastq
433
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
Organism
559
Homo sapiens
Biosample type
379
cell line
160
tissue
15
in vitro differentiated cells
5
primary cell
Organ
559
liver
271
pancreas
220
brain
182
epithelium
160
connective tissue
105
vasculature
104
heart
101
blood vessel
79
adipose tissue
67
limb
60
blood
60
bodily fluid
56
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
22
spleen
17
vein
6
eye
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
Project
559
AMP
Genome assembly (visualization)
431
hg19
361
GRCh38
Lab
541
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
559 results
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ChIP-seq
WGBS
RRBS
cell line
HepG2
378
1
tissue
liver
145
3
1
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
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