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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
Assay category
192
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
31
May, 2020
30
August, 2017
19
August, 2021
13
December, 2017
1
November, 2018
Available data
150
bam
119
fastq
73
bigWig
55
tagAlign
54
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
tar
Organism
192
Homo sapiens
Biosample type
117
cell line
73
tissue
1
in vitro differentiated cells
1
primary cell
Organ
192
liver
78
connective tissue
61
pancreas
55
adipose tissue
47
brain
32
epithelium
27
vasculature
26
blood vessel
26
musculature of body
21
heart
19
limb
13
kidney
11
nerve
9
artery
8
spleen
7
embryo
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
Project
192
AMP
Genome assembly (visualization)
429
hg19
GRCh38
Lab
174
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assay_title!
FAIRE-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ChIP-seq
cell line
HepG2
117
tissue
liver
70
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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