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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
whole genome sequencing assay
Assay category
618
DNA binding
197
Transcription
73
DNA accessibility
8
3D chromatin structure
8
DNA methylation
Target of assay
338
transcription factor
152
histone modification
151
histone
125
control
82
recombinant protein
76
broad histone mark
75
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
76
October, 2019
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
34
June, 2019
12
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
1
December, 2018
Available data
792
bam
710
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
178
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
Organism
909
Homo sapiens
Biosample type
480
tissue
400
cell line
15
in vitro differentiated cells
14
primary cell
Organ
942
pancreas
787
liver
681
connective tissue
523
epithelium
488
adipose tissue
392
heart
352
kidney
281
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
909
AMP
Genome assembly (visualization)
718
hg19
624
GRCh38
Lab
839
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
whole genome sequencing assay
small RNA-seq
BIOSAMPLE
ASSAY
909 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
tissue
liver
145
167
2
20
1
3
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
HepG2
378
14
1
2
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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