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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
27
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
157
Transcription
27
DNA binding
4
DNA accessibility
Target of assay
27
histone
27
histone modification
23
narrow histone mark
4
broad histone mark
Date released
162
May, 2020
7
July, 2019
7
October, 2019
5
December, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
531
bam
528
bigWig
367
bed narrowPeak
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
188
Homo sapiens
Biosample type
176
tissue
11
primary cell
1
cell line
Organ
491
connective tissue
401
adipose tissue
278
pancreas
266
heart
205
kidney
202
brain
188
liver
187
vasculature
185
blood vessel
128
artery
113
epithelium
96
limb
66
bone element
53
musculature of body
31
nerve
18
ureter
12
vein
10
embryo
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
188
AMP
Genome assembly (visualization)
235
hg19
188
GRCh38
Lab
188
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
FAIRE-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
188 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
DNase-seq
tissue
liver
147
24
1
right lobe of liver
2
2
primary cell
hepatocyte
5
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
cell line
HepG2
1
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