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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
82
ChIP-seq
21
ATAC-seq
3
DNase-seq
3
WGBS
3
small RNA-seq
2
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
82
DNA binding
24
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
55
histone
55
histone modification
39
narrow histone mark
27
control
16
broad histone mark
Date released
193
May, 2020
40
May, 2022
26
August, 2017
10
July, 2019
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
292
Homo sapiens
Biosample type
278
tissue
cell line
14
primary cell
Organ
583
connective tissue
447
adipose tissue
383
pancreas
334
kidney
292
liver
287
heart
264
brain
187
epithelium
163
vasculature
160
blood vessel
159
bone element
122
limb
94
musculature of body
75
artery
61
eye
43
nerve
21
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
embryo
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
292
AMP
Genome assembly (visualization)
218
hg19
187
GRCh38
Lab
252
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
files.file_type!
fastq
biosample_type!
cell line
BIOSAMPLE
ASSAY
292 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
78
20
2
1
1
1
1
right lobe of liver
3
1
1
2
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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