Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
5
DNase-seq
Assay category
45
DNA binding
5
DNA accessibility
Target of assay
42
transcription factor
3
chromatin remodeller
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
other context
1
other post-translational modification
Date released
45
November, 2017
3
November, 2018
2
June, 2019
Available data
654
bam
595
bigWig
438
fastq
416
bed narrowPeak
333
bigBed narrowPeak
174
tsv
75
tagAlign
50
bed broadPeak
50
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
50
Homo sapiens
Biosample type
45
cell line
3
tissue
2
primary cell
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
50
AMP
Genome assembly (visualization)
50
hg19
38
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
inconsistent control read length
assay_title!
FAIRE-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
50 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
45
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
Download