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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
7
DNase-seq
1
ATAC-seq
Assay category
376
DNA binding
8
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
59
histone
59
histone modification
55
RNA binding protein
37
broad histone mark
23
chromatin remodeller
22
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
26
October, 2019
6
August, 2017
2
June, 2019
Available data
723
bam
653
bigWig
468
bed narrowPeak
465
fastq
384
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
384
Homo sapiens
Biosample type
293
cell line
75
tissue
14
in vitro differentiated cells
2
primary cell
Organ
358
liver
126
brain
103
kidney
94
heart
89
pancreas
84
limb
82
vasculature
78
blood vessel
75
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
12
vein
10
adipose tissue
6
eye
Project
384
AMP
Genome assembly (visualization)
380
hg19
352
GRCh38
Lab
384
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
384 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
tibial nerve
24
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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