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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
DNase-seq
2
Hi-C
FAIRE-seq
1
pCHi-C
Assay category
21
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
24
October, 2019
2
March, 2020
Available data
19
bam
14
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tsv
Organism
26
Homo sapiens
Biosample type
21
primary cell
5
tissue
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
353
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
tissue
islet of Langerhans
4
ovary
1
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