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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
37
DNA accessibility
9
Transcription
8
3D chromatin structure
6
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
20
October, 2019
10
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
82
bigWig
76
bam
72
bed narrowPeak
59
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
txt
Organism
117
Homo sapiens
Biosample type
82
tissue
35
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
353
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
89
hg19
65
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
17
2
2
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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